Cyanine5.5 phosphoramidite

Cat. # Quantity Price Lead time
2680-100mg 100 mg –   in stock
2680-250mg 250 mg $290 in stock
2680-1g 1 g $950 in stock
2680-10g 10 g please inquire 5 days
Found better price? Let us know and we will propose the way forward!

Cyanine5.5 is a fluorophore with an emission in the far-red range of the spectrum. This dye is useful for multiplex qPCR. Commercial six-channel qPCR instruments often have a channel for Cyanine5.5.

This phosphoramidite can be used for the synthesis of 5'-labeled oligonucleotides by direct labeling in an oligonucleotide synthesizer.

The structure of the phosphoramidite functional group that is attached to a secondary carbon atom provides extra stability against Arbuzov rearrangement. This helps maintain coupling performance over a longer storage time in oligonucleotide synthesizers, compared to phosphoramidites derived from primary alcohols.

Absorption and emission spectra of Cyanine5.5

Absorption and emission spectra of Cyanine5.5

Customers also purchased with this product

Biotin phosphoramidite (hydroxyprolinol)

Biotin phosphoramidite reagent for the synthesis of biotinylated oligos. Contains a dimethyoxytrityl group.
Add this product to your cart and
get free express delivery

Phosphate CPG 1000 solid support

Phosphate modifier CPG for the solid phase synthesis of long (up to 120mer) oligonucleotides containing 3 prime phosphate modification.

AF 488 NHS ester

AF 488 NHS ester, a bright, photostable, and hydrophilic fluorescent dye for the green channel.

General properties

Appearance: dark colored solid
Molecular weight: 916.61
Molecular formula: C55H71N5ClO3P
Quality control: NMR 1H, 31P, HPLC-MS (85%)
Storage conditions: Storage: 12 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate.
MSDS: Download
Product specifications

Spectral properties

Excitation/absorption maximum, nm: 694
ε, L⋅mol−1⋅cm−1: 198000
Emission maximum, nm: 710
Fluorescence quantum yield: 0.2
CF260: 0.07
CF280: 0.03

Oligo synthesis details

Diluent: acetonitrile
Coupling conditions: 6 min coupling time recommended
Deprotection conditions: recommended 48 h at +4°C or ultramild protective groups; 24 h at rt possible
Your item has been added. View your cart or proceed to checkout
The count of items is incorrect.